PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 219aa    MW: 23380.6 Da    PI: 5.0726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-1560109155
                                                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                                           ++y+G r  +++g+Wv+eIr p     r  +r++lg+f t+e+Aa+a++ a+++l+g
  augustus_masked-scaffold02792-abinit-gene-0.3-mRNA-1  60 PKYRGAR--SRSGKWVSEIRQP-----RkpTRIWLGTFQTPEMAAAAYDVAALALKG 109
                                                           5788885..678*********8.....448************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-1660119No hitNo description
SMARTSM003801.1E-2661123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-2661118IPR001471AP2/ERF domain
PfamPF008471.1E-761109IPR001471AP2/ERF domain
PROSITE profilePS5103219.58561117IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1761118IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MANNRANVSQ NDSSTPANVR REETTLTSNI SSSTTTATSS TSVSEGFSGP SGSPSTTQHP  60
KYRGARSRSG KWVSEIRQPR KPTRIWLGTF QTPEMAAAAY DVAALALKGP NTALNFPNLI  120
LSYPIPASMS PSDIRAAAAC AAEDRLHRSS EGSTGQETTY RRRSEEEFVD EDALLNMPNL  180
LVDMAEGMLV SPPRIQSKSS SDESGGDGNG DGDGLWSYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033804.11e-59PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9SJR09e-46ERF24_ARATH; Ethylene-responsive transcription factor ERF024
SwissprotQ9FJ904e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A067JS161e-58A0A067JS16_JATCU; Uncharacterized protein
STRINGPOPTR_0003s12120.12e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-37ERF family protein